On the hunt for healthier chocolate chip muffins? This recipe is made with whole wheat flour, less sugar, and naturally no milk. Perfectly moist and packed with chocolate chips, make these for your next snack time.

I've been making healthy muffins for over 15 years and it's something I bake many times each month! Next, try my popular blueberry muffin recipe without milk, it's another recipe to make when you run out of milk or are avoiding dairy. Or make these decadent chocolate carrot muffins!

A light colored muffins with a lot of chocolate chips poking out of it, sitting on a brown napkin, with other chocolate chip muffins around it.

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Ingredients needed
How to make chocolate chip muffins without milk
Tips for whole wheat muffins with chocolate chips
Other healthy muffins you may like...
Whole Wheat Chocolate Chip Muffins
Danika Vanderpyl, C.H.N

Ingredients needed

Oil, whole wheat flour, sugar, water, apple cider vinegar, baking soda, baking powder, salt, chocolate chips, vanilla measured out in bowls and 2 eggs on the counter.

Things to know about the ingredients:

Whole wheat flour: This recipe uses whole wheat flour to increase the nutrient density in each bite. I only use organic whole wheat flour because as someone who has studied nutrition, I feel this is best for our bodies and our kids. Read more on this here.
Oil: Any neutral tasting oil works for these muffins. For the best option for our bodies look for a cold-pressed, organic oil preferably stored in a dark-coloured bottle (to prevent it from going rancid). Such as sunflower oil, grapeseed oil, or melt coconut oil to use. I will say coconut oil will change the taste of the muffins. I haven't tried it but from my baking experience, I believe melted butter would work just fine too!
Chocolate chips: In this recipe, I used dark chocolate chips as they contain less sugar and additives and are dairy-free. However, milk chocolate chips can be used of course!

How to make chocolate chip muffins without milk

Follow along with these step-by-step photos from my kitchen. It's kinda like we are making them together.

A glass bowl with yellow liquid in it with a whisk.

Preheat the oven to 425 degrees Fahrenheit. Place all the wet ingredients into a bowl, the eggs, oil, water, vanilla, apple cider vinegar and whisk together.

A wooden bowl with whole wheat flour in it.

In another bowl place the flour, sugar, baking powder, baking soda, and salt. Mix together well.

A wooden bowl with chocolate chip muffin batter in it with a blue spatula in the bowl.

Add the chocolate chips and the egg mixture into the flour mixture and fold together about 12-15 times with a spatula. It's important not to overmix the muffin batter.

Line a muffin pan with liners or grease the pan well. Place about ⅓ cup of batter in each muffin cup to fill them all the way up. Sprinkle with coarse sugar or chocolate chips as desired.
Place the muffin tin in the preheated oven (425 Fahrenheit) to bake for 8 minutes, then turn the oven down to 375 Fahrenheit and bake for another 7-10 minutes, until they are fully baked.

Tips for whole wheat muffins with chocolate chips

Don't overmix the batter, only stir the batter about 12 times to get fluffy moist chocolate chip muffins with whole wheat flour. There may be streaks of flour still and it will get mixed in as you fill the muffin cups.

Bake at a high temperature to start, 425 Fahrenheit, to create a higher muffin dome, then turn the oven down to 375 Fahrenheit and finish baking them completely.

Let the muffins sit for 5 minutes before removing them from the pan. When muffins are still hot they easily break, letting them cool slightly stops them from crumbling.

Use cupcake liners. With the big bakery-style tops it makes them easier to remove from the pan without breaking them! I have used silicone liners or paper liners for this recipe. I find when the muffins are in a grease pan or with paper liners they will bake 2-3 minutes faster than when they are in silicone liners.

Nutritionist looking at her cupboards full of healthy food in jars.

A light colored muffins with chocolate chips poking out of it.

Other healthy muffins you may like...

I'm obsessed with making nutrient-dense muffins for my kids' snacktime. Try these recipes next!

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Whole Wheat Chocolate Chip Muffins

Danika Vanderpyl

A loaded chocolate chip muffin made with whole wheat flour! These are wholesome muffins without compromising the texture or taste. Make them for your next snack!

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Prep Time 15

Cook Time 15

Total Time 30

Course Breakfast, Snack

Cuisine American

Servings muffins

Calories 274 kcal

Equipment

1 muffin pan
12 muffin liners

Ingredients

Dry ingredients

2 cups whole wheat flour
¾ cup white sugar
2 teaspoons baking powder
½ teaspoon baking soda
¼ teaspoon salt

Wet ingredients

2 eggs
⅔ cup oil
⅔ cup water
1 tablespoons apple cider vinegar or lemon juice
2 teaspoons vanilla extract

Add later

1 cup chocolate chips
2 tablespoons optional: turbinado sugar

Instructions

Preheat the oven to 425.
Mix wet ingredients: In a medium bowl, place the eggs, oil, water, apple cider vinegar, and vanilla. Whisk together until it is well combined.
Mix dry ingredients: In a large bowl mix the dry ingredients, whole wheat flour, sugar, sea salt, baking powder and baking soda. Use a whisk to mix everything well.
Fold everything together: Add egg mixture, and chocolate chips into the dry ingredients. Use a spatula to stir the batter together, about 12 folds, just until everything is incorporated. Do not over-stir.
Scoop & bake: Add about ⅓ cup of batter to fill each muffin cup. Optionally sprinkle more chocolate chips or with a little turbinado sugar (coarse sugar).
Place the muffin tin in the preheated oven (425 Fahrenheit) to bake for 8 minutes, then turn the oven down to 375 Fahrenheit and bake for another 7-10 minutes. Remove muffins from the oven when they spring back from the touch and when the center does not look gooey. Let them sit in the pan for 5 minutes before removing.

Notes

Chocolate chips: I like to use mini chocolate chips as they are distributed evenly through the muffin and my kiddos cannot pick them out! However, any chocolate chips works. I also use dark chocolate chips as they contain less sugar and no dairy.

Read more about which oil or whole wheat flour to use above in the blog post.

Scroll up for step-by-step photos.

These muffins freeze well. Wait until they are completely cool and then store in a ziplock bag or a sealing container. Place in the freezer for up to 6 months. Read more about the best way to store muffins here.

Nutrition

Calories: 274kcalCarbohydrates: 26gProtein: 3gFat: 18gSaturated Fat: 4gPolyunsaturated Fat: 4gMonounsaturated Fat: 8gTrans Fat: 0.1gCholesterol: 27mgSodium: 106mgPotassium: 77mgFiber: 1gSugar: 9gVitamin A: 40IUCalcium: 19mgIron: 1mg

Keyword Chocolate chips, Dairy Free Muffins, Healthy Muffins, Whole Wheat Flour

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