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Home » Recipes » Baking

Healthy Zucchini Muffins with Yogurt

Published: Feb 4, 2026 by Danika Vanderpyl · This post may contain affiliate links · Leave a Comment

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Moist zucchini muffins with hints of orange and made with whole-wheat flour. Then I like to increase the protein with yogurt, and voilà: a nutritious, yummy snack I feel good about eating anytime of day!

Zucchini muffins on a wooden cutting board, one broken open with a chunk of butter on it.
Jump to:
  • Ingredients needed
  • Danika's insight on homemade muffins
  • How to make zucchini yogurt muffins
  • Tips for the zucchini muffins
  • More wholesome muffins
  • Zucchini Muffins with Yogurt
  • Danika Vanderpyl, C.H.N

Ingredients needed

Ingredients in bowls for zucchini muffins including whole wheat flour, vanilla, coconut sugar, eggs, yogurt, sea salt, baking powder, baking soda, zucchini, orange.

Danika's insight on homemade muffins

As someone who studied nutrition for 2 years and continues to choose to feed my family with whole foods, I want to encourage you!

Zucchini is a great source of fiber and vitamins C and B6. Adding zucchini to muffins is a great way to encourage kids to eat vegetables - these muffins don't have a strong taste or any weird texture! For a more fiber-fueled snack, try these zucchini muffins with bran!

It's a huge win that you are choosing to make muffins at home. Let's all realize muffins from the store are completely different than a homemade muffin! We use a natural sweetener in this recipe - honey. We don't have any preservatives, and we choose ingredients that are actually nutrient-dense, contributing to your well-being.

So keep crushing it and make the homemade muffins! ❤️

How to make zucchini yogurt muffins

These step-by-step photos are from my kitchen. Follow along, and let's make some muffins!

A cheese grater on a cutting board with a zucchini being thinly grated.
  1. Grate the zucchini on a box grater to make thin pieces of zucchini.
Grated zucchini on a tea towel.

2. If the zucchini is quite moist, I like to place it in a tea towel or paper towel and squeeze any excess liquid before using it in muffins!

Dry ingredients for muffins flour, coconut sugar, baking soda, baking powder, salt.

3. Whisk together the whole-wheat flour, sugar, baking powder, baking soda, cinnamon and sea salt until everything is mixed in well - this is so that no one gets a salty bite of muffin!

4. Push the flour to the sides of the bowl. On top of the flour, mix the eggs and yogurt, orange juice and orange zest without mixing it into the flour. (I do this so I don't have to make two bowls dirty!)

    Folding together muffin batter in a glass mixing bowl with a spatula.

    5. Add the grated zucchini and fold all the batter together just until mixed! Place muffin liners into a muffin pan. Fill each muffin cup all the way up, about ⅓ cup each.

      A muffin pan with paper liners with a ⅓ cup measuring scoop putting batter in the pan.

      6. Place the muffin tin in the preheated oven (425 degrees Fahrenheit or 215 °C) to bake for 8 minutes, then turn the oven down to 375 degrees Fahrenheit (190 °C) and bake for another 8-10 minutes, until they are fully baked.

        Tips for the zucchini muffins

        • Grate the zucchini finely, remove any seeds from large garden zucchini, and if your zucchini contains a lot of moisture, squeeze it out!
        • My secret ingredient is orange! Use an organic orange for the zest of these muffins to avoid consuming anything sprayed on the orange.
        • Let the muffins sit for 5 minutes before removing them from the pan. When muffins are still hot, they easily break; letting them cool slightly stops them from crumbling.
        • Use cupcake liners. With the big tops, it makes them easier to remove from the pan without breaking them! I have used silicone liners or paper liners. I find that when the muffins are in a grease pan or with paper liners, they will bake 2-3 minutes faster than when they are in silicone liners.
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        A brown muffins with green flecks on a cutting board.

        More wholesome muffins

        If you have lots of garden zucchini (like I dream of every summer), I recommend making this zucchini feta egg bake next!

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        A brown muffins with green flecks on a cutting board.

        Zucchini Muffins with Yogurt

        Danika Vanderpyl
        Moist zucchini muffins with my secret ingredients: orange zest and cinnamon!
        No ratings yet
        Print Recipe Pin Recipe
        Prep Time 20 minutes mins
        Cook Time 16 minutes mins
        Total Time 36 minutes mins
        Course Breakfast, Snack
        Cuisine American
        Servings 11 muffins
        Calories 151 kcal

        Equipment

        • 1 muffin pan

        Ingredients
          

        • 2 ½ cups zucchini grated

        Dry Ingredients

        • 2 cups whole wheat flour
        • 1 cup coconut sugar or brown sugar
        • 1 teaspoon baking powder
        • 1 teaspoon baking soda
        • 1 teaspoon cinnamon
        • ½ teaspoon sea salt

        Wet Ingredients

        • ½ cup yogurt
        • 2 eggs
        • 1 orange zested, and 1 tablespoon fresh-squeezed orange juice

        Instructions
         

        • Preheat the oven to 425°F (215 °C) and line a muffin tin with paper liners or grease it well.
        • Use a box grater to finely grate the zucchini. No need to peel the zucchini. If you find your zucchini is quite moist, place the grated zucchini in a tea towel or a paper towel and squeeze out any moisture.
        • In a large bowl, place the whole-wheat flour, coconut sugar, baking powder, baking soda, cinnamon, and sea salt; whisk together well. Push the flour mixture to the sides of the bowl.
        • On top of the dry ingredients, place the yogurt, eggs, orange juice, and orange zest. Then mix just these wet ingredients as best you can without stirring in the flour mixture. Once the eggs are beaten in a yellow mixture with the yogurt, add the grated zucchini to the bowl and fold the flour mixture into the wet mixture just until mixed; do not overmix.
        • Divide the batter evenly into the muffin tin. I make this batter into 11 large muffins. Bake at 425°F (215 °C) for 8 minutes, then turn the oven down to 375°F (190 °C) and bake for another 7-8 minutes until the muffins are fully baked. Allow the zucchini muffins to cool in the pan for 5 minutes, then transfer to a rack to finish cooling.

        Notes

        Freezing muffins: I found these muffins freeze well. Freeze in a sealing bag or container and enjoy within 6 months. 

        Nutrition

        Serving: 1muffinCalories: 151kcalCarbohydrates: 31gProtein: 5gFat: 2gSaturated Fat: 1gPolyunsaturated Fat: 0.4gMonounsaturated Fat: 0.5gTrans Fat: 0.003gCholesterol: 31mgSodium: 291mgPotassium: 203mgFiber: 3gSugar: 12gVitamin A: 140IUVitamin C: 11mgCalcium: 58mgIron: 1mg
        Keyword Healthy Muffins, Whole wheat muffins, Zucchini
        Did you love this recipe?Make sure to leave a comment below!
        danika sitting in a chair

        Danika Vanderpyl, C.H.N

        I create snack recipes with healthy ingredients that are mostly already in your kitchen. I'm certified in Holistic Nutrition and I care about giving my kids real food. Let me share my nutrient-dense easy snacks with you.

        Learn more about me →

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        Danika-vanderpyl-hiking-with-mountains

        Hey hey! I'm Danika.

        I'm certified in holistic nutrition and I create snack recipes! Because unprocessed, wholesome, nutrient-dense snacks are hard to find but I want everyone to know they are easy to make!

        About me

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